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Run a workflow via it's YAML specification.

Source: R/RunWorkflow.R
RunWorkflow.Rd

[Stable]

Attempts to run a single assessment (lWorkflow) using shared data (lData) and metadata (lMapping). Calls RunStep for each item in lWorkflow$workflow and saves the results to lWorkflow.

Usage

RunWorkflow(
  lWorkflow,
  lData = NULL,
  bReturnResult = TRUE,
  bKeepInputData = TRUE
)

Arguments

lWorkflow

list A named list of metadata defining how the workflow should be run.

lData

list A named list of domain-level data frames.

bReturnResult

boolean should only the result from the last step (lResults) be returned? If false, the full workflow (including lResults) is returned. Default is TRUE.

bKeepInputData

boolean should the input data be included in lData after the workflow is run? Only relevant when bReturnResult is FALSE. Default is TRUE.

Value

Object containing the results of the workflow's last step (if bLastResult is TRUE) or the full workflow object (if bReturnResults is TRUE) or the full workflow object (if bReturnResults is FALSE).

list contains just lData if bReturnData is TRUE, otherwise returns the full lWorkflow object.

Examples

if (FALSE) { # \dontrun{
lAssessments <- MakeWorkflowList("kri0001")
lData <- list(
  dfAE = clindata::rawplus_ae,
  dfCONSENT = clindata::rawplus_consent,
  dfDISP = clindata::rawplus_dm,
  dfIE = clindata::rawplus_ie,
  dfLB = clindata::rawplus_lb,
  dfPD = clindata::ctms_protdev,
  dfSUBJ = clindata::rawplus_dm
)
wf_mapping <- MakeWorkflowList("mapping")
lMapped <- RunWorkflow(wf_mapping, lData)$lData

output <- map(lAssessments, ~ RunWorkflow(., lMapped))
} # }