This page provides a sample Site KRI Report generated using the
standard KRIs included in the gsm.kri package. Expand the
“Setup” section below to see the code used to generate the report. Or
scroll down for the standard KRI report output.
# Load libraries
library(gsm.core)
library(gsm.kri)
library(here)
## Site Report
lCharts <- gsm.kri::MakeCharts(
dfResults = gsm.core::reportingResults,
dfGroups = gsm.core::reportingGroups,
dfMetrics = gsm.core::reportingMetrics,
dfBounds = gsm.core::reportingBounds
)## Parsed -2,-1,2,3 to numeric vector: -2, -1, 2, 3
## Parsed -2,-1,2,3 to numeric vector: -2, -1, 2, 3
## Parsed -3,-2,2,3 to numeric vector: -3, -2, 2, 3
## Parsed -3,-2,2,3 to numeric vector: -3, -2, 2, 3
## Parsed 2,3 to numeric vector: 2, 3
## Parsed 2,3 to numeric vector: 2, 3
## Parsed 2,3 to numeric vector: 2, 3
## Parsed 2,3 to numeric vector: 2, 3
## Parsed 2,3 to numeric vector: 2, 3
## Parsed 2,3 to numeric vector: 2, 3
## Parsed 2,3 to numeric vector: 2, 3
## Parsed -3,-2,2,3 to numeric vector: -3, -2, 2, 3
## MetricID not found in dfBounds. Please double check input data if intentional.
## Parsed 0.9,0.85 to numeric vector: 0.9, 0.85
## MetricID not found in dfBounds. Please double check input data if intentional.
## Parsed 1.5,2.5 to numeric vector: 1.5, 2.5
## MetricID not found in dfBounds. Please double check input data if intentional.## Warning: Warning: Failed to parse strThreshold ('NA') to a numeric vector.| Nickname | OAK-38 |
| Status | Active |
| Site Activation | 145 / 150 (96.7%) |
| Participant Enrollment | 764 / 1000 (76.4%) |
Missing delta columns in dfResults: Flag_Change, Flag_Previous, Score_Change, Score_Previous, Numerator_Previous, Denominator_Previous, Metric_Previous . Not rendering list of newly changed flags.NULL
| Type | ID | GroupLevel | Abbreviation | Metric | Numerator | Denominator | Model | AnalysisType | Score | Threshold | AccrualThreshold | AccrualMetric | Priority | Flag | RiskScoreWeight | ScoreCol | nPropRate | nNumDeviations | MetricID |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Analysis | kri0001 | Site | AE | Adverse Event Rate | Adverse Events | Days on Study | Normal Approximation | rate | Adjusted Z-Score | -2,-1,2,3 | 30 | Denominator | 0 | -2,-1,0,1,2 | 32,16,0,1,2 | NA | NA | NA | Analysis_kri0001 |
| Analysis | kri0002 | Site | SAE | Serious Adverse Event Rate | Serious Adverse Events | Days on Study | Normal Approximation | rate | Adjusted Z-Score | -2,-1,2,3 | 30 | Denominator | 0 | -2,-1,0,1,2 | 8,0,0,4,8 | NA | NA | NA | Analysis_kri0002 |
| Analysis | kri0003 | Site | PD | Non-Important Protocol Deviation Rate | Non-Important Protocol Deviations | Days on Study | Normal Approximation | rate | Adjusted Z-Score | -3,-2,2,3 | 30 | Denominator | 0 | -2,-1,0,1,2 | 8,4,0,8,16 | NA | NA | NA | Analysis_kri0003 |
| Analysis | kri0004 | Site | IPD | Important Protocol Deviation Rate | Important Protocol Deviations | Days on Study | Normal Approximation | rate | Adjusted Z-Score | -3,-2,2,3 | 30 | Denominator | 0 | -2,-1,0,1,2 | 0,0,0,16,32 | NA | NA | NA | Analysis_kri0004 |
| Analysis | kri0005 | Site | LB | Grade 3+ Lab Abnormality Rate | Grade 3+ Abnormal Labs Samples | Total Lab Samples | Normal Approximation | binary | Adjusted Z-Score | 2,3 | 10 | Numerator | 0 | 0,1,2 | 0,1,2 | NA | NA | NA | Analysis_kri0005 |
| Analysis | kri0006 | Site | SDSC | Study Discontinuation Rate | Subjects Discontinued - Study | Enrolled Subjects | Normal Approximation | binary | Adjusted Z-Score | 2,3 | 3 | Numerator | 0 | 0,1,2 | 0,16,32 | NA | NA | NA | Analysis_kri0006 |
| Analysis | kri0007 | Site | TDSC | Treatment Discontinuation Rate | Subjects Discontinued - Treatment | Enrolled Subjects | Normal Approximation | binary | Adjusted Z-Score | 2,3 | 3 | Numerator | 0 | 0,1,2 | 0,16,32 | NA | NA | NA | Analysis_kri0007 |
| Analysis | kri0008 | Site | QRY | Query Rate | Queries | Total Data Points | Normal Approximation | rate | Adjusted Z-Score | 2,3 | 30 | Numerator | 0 | 0,1,2 | 0,1,2 | NA | NA | NA | Analysis_kri0008 |
| Analysis | kri0009 | Site | OQRY | Delayed Query Resolution Rate | Queries That Were Open > 30 Days | Total Queries | Normal Approximation | binary | Adjusted Z-Score | 2,3 | 30 | Numerator | 0 | 0,1,2 | 0,1,2 | NA | NA | NA | Analysis_kri0009 |
| Analysis | kri0010 | Site | ODAT | Delayed Data Entry Rate | Data Pages Entered > 10 Days | Total Data Pages | Normal Approximation | binary | Adjusted Z-Score | 2,3 | 30 | Numerator | 0 | 0,1,2 | 0,1,2 | NA | NA | NA | Analysis_kri0010 |
| Analysis | kri0011 | Site | CDAT | Data Change Rate | Data Points with 1+ Change | Total Data Points | Normal Approximation | binary | Adjusted Z-Score | 2,3 | 100 | Numerator | 0 | 0,1,2 | 0,1,2 | NA | NA | NA | Analysis_kri0011 |
| Analysis | kri0012 | Site | SF | Screen Failure Rate | Screen Failures | Screened Subjects | Normal Approximation | binary | Adjusted Z-Score | -3,-2,2,3 | 3 | Denominator | 0 | -2,-1,0,1,2 | 0,0,0,8,16 | NA | NA | NA | Analysis_kri0012 |
| Analysis | kri0013 | Site | PK | PK Collection Compliance Rate | PK Samples Collected | PK Samples Expected | Identity | identity | PK Collection Compliance Rate | 0.9,0.85 | 3 | Difference | 0 | -2,-1,0 | NA | NA | NA | NA | Analysis_kri0013 |
| Analysis | kri0014 | Site | IE | Inclusion/Exclusion Violation Rate | Number of subjects ineligible | Number of subjects enrolled | Identity (Numerator) | identity | Ineligible Participants | 1.5,2.5 | 3 | Denominator | 0 | 0,1,2 | 0,8,16 | Numerator | NA | NA | Analysis_kri0014 |
| Analysis | srs0001 | Site | SRS | Site Risk Score | Weight | Maximum Weights | Identity | identity | Normalized Risk Score | NA | NA | NA | 4 | NA | NA | NA | NA | NA | Analysis_srs0001 |