gsm.kri package. Expand the
“Setup” section below to see the code used to generate the report. Or
scroll down for the standard KRI report output.
# Load libraries
library(gsm.core)
library(gsm.kri)
library(here)## here() starts at /home/runner/work/gsm.kri/gsm.kri## Country Report
lCharts_country <- gsm.kri::MakeCharts(
dfResults = gsm.core::reportingResults_country,
dfGroups = gsm.core::reportingGroups_country,
dfMetrics = gsm.core::reportingMetrics_country,
dfBounds = gsm.core::reportingBounds_country
)## Parsed -2,-1,2,3 to numeric vector: -2, -1, 2, 3## Parsed -2,-1,2,3 to numeric vector: -2, -1, 2, 3
## Parsed -3,-2,2,3 to numeric vector: -3, -2, 2, 3
## Parsed -3,-2,2,3 to numeric vector: -3, -2, 2, 3
## Parsed 2,3 to numeric vector: 2, 3
## Parsed 2,3 to numeric vector: 2, 3
## Parsed 2,3 to numeric vector: 2, 3
## Parsed 2,3 to numeric vector: 2, 3
## Parsed 2,3 to numeric vector: 2, 3
## Parsed 2,3 to numeric vector: 2, 3
## Parsed 2,3 to numeric vector: 2, 3
## Parsed -3,-2,2,3 to numeric vector: -3, -2, 2, 3
## MetricID not found in dfBounds. Please double check input data if intentional.
## Parsed 0.9,0.85 to numeric vector: 0.9, 0.85
## Parsed -2, 2 to numeric vector: -2, 2| Nickname | OAK-38 |
| Status | Active |
| Site Activation | 145 / 150 (96.7%) |
| Participant Enrollment | 764 / 1000 (76.4%) |
Missing delta columns in dfResults: Flag_Change, Flag_Previous, Score_Change, Score_Previous, Numerator_Previous, Denominator_Previous, Metric_Previous . Not rendering list of newly changed flags.NULL
| Type | ID | GroupLevel | Abbreviation | Metric | Numerator | Denominator | Model | AnalysisType | Score | Threshold | AccrualThreshold | AccrualMetric | Priority | Flag | RiskScoreWeight | ScoreCol | nPropRate | nNumDeviations | MetricID |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Analysis | cou0001 | Country | AE | Adverse Event Rate | Adverse Events | Days on Study | Normal Approximation | rate | Adjusted Z-Score | -2,-1,2,3 | 30 | Denominator | 0 | NA | NA | NA | NA | NA | Analysis_cou0001 |
| Analysis | cou0002 | Country | SAE | Serious Adverse Event Rate | Serious Adverse Events | Days on Study | Normal Approximation | rate | Adjusted Z-Score | -2,-1,2,3 | 30 | Denominator | 0 | NA | NA | NA | NA | NA | Analysis_cou0002 |
| Analysis | cou0003 | Country | PD | Non-Important Protocol Deviation Rate | Non-Important Protocol Deviations | Days on Study | Normal Approximation | rate | Adjusted Z-Score | -3,-2,2,3 | 30 | Denominator | 0 | NA | NA | NA | NA | NA | Analysis_cou0003 |
| Analysis | cou0004 | Country | IPD | Important Protocol Deviation Rate | Important Protocol Deviations | Days on Study | Normal Approximation | rate | Adjusted Z-Score | -3,-2,2,3 | 30 | Denominator | 0 | NA | NA | NA | NA | NA | Analysis_cou0004 |
| Analysis | cou0005 | Country | LB | Grade 3+ Lab Abnormality Rate | Grade 3+ Abnormal Labs Samples | Total Lab Samples | Normal Approximation | binary | Adjusted Z-Score | 2,3 | 10 | Numerator | 0 | 0,1,2 | NA | NA | NA | NA | Analysis_cou0005 |
| Analysis | cou0006 | Country | SDSC | Study Discontinuation Rate | Subjects Discontinued - Study | Enrolled Subjects | Normal Approximation | binary | Adjusted Z-Score | 2,3 | 3 | Numerator | 0 | 0,1,2 | NA | NA | NA | NA | Analysis_cou0006 |
| Analysis | cou0007 | Country | TDSC | Treatment Discontinuation Rate | Subjects Discontinued - Treatment | Enrolled Subjects | Normal Approximation | binary | Adjusted Z-Score | 2,3 | 3 | Numerator | 0 | 0,1,2 | NA | NA | NA | NA | Analysis_cou0007 |
| Analysis | cou0008 | Country | QRY | Query Rate | Queries | Total Data Points | Normal Approximation | rate | Adjusted Z-Score | 2,3 | 30 | Numerator | 0 | 0,1,2 | NA | NA | NA | NA | Analysis_cou0008 |
| Analysis | cou0009 | Country | OQRY | Delayed Query Resolution Rate | Queries That Were Open > 30 Days | Total Queries | Normal Approximation | binary | Adjusted Z-Score | 2,3 | 30 | Numerator | 0 | 0,1,2 | NA | NA | NA | NA | Analysis_cou0009 |
| Analysis | cou0010 | Country | ODAT | Delayed Data Entry Rate | Data Pages Entered > 10 Days | Total Data Pages | Normal Approximation | binary | Adjusted Z-Score | 2,3 | 30 | Numerator | 0 | 0,1,2 | NA | NA | NA | NA | Analysis_cou0010 |
| Analysis | cou0011 | Country | CDAT | Data Change Rate | Data Points with 1+ Change | Total Data Points | Normal Approximation | binary | Adjusted Z-Score | 2,3 | 100 | Numerator | 0 | 0,1,2 | NA | NA | NA | NA | Analysis_cou0011 |
| Analysis | cou0012 | Country | SF | Screen Failure Rate | Screen Failures | Screened Subjects | Normal Approximation | binary | Adjusted Z-Score | -3,-2,2,3 | 3 | Denominator | 0 | NA | NA | NA | NA | NA | Analysis_cou0012 |
| Analysis | cou0013 | Country | PK | PK Collection Compliance Rate | PK Samples Collected | PK Samples Expected | Identity | identity | PK Collection Compliance Rate | 0.9,0.85 | 3 | Difference | 0 | -2,-1,0 | NA | NA | NA | NA | Analysis_cou0013 |
| Analysis | cou0014 | Country | IE | Inclusion/Exclusion Violation Rate | Number of subjects ineligible | Number of subjects enrolled | Normal Approximation | binary | Adjusted Z-Score | -2, 2 | 3 | Denominator | 0 | -1,0,1 | 0,8,16 | NA | NA | NA | Analysis_cou0014 |